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Last updated on Aug 30, 2024
  1. All
  2. Biotechnology

You've encountered unexpected sequencing results. How can you collaborate with other labs to validate them?

When your lab stumbles upon unexpected sequencing results, it's crucial to validate them with peers. Here's how to foster productive collaborations:

- Reach out to other labs with expertise in similar areas and propose a data exchange or joint analysis.

- Utilize online forums and platforms specific to the scientific community to seek insights and share preliminary findings.

- Attend conferences and workshops to network with fellow researchers and discuss potential collaborative validation studies.

What strategies have you found effective for validating unexpected results?

Biotechnology Biotechnology

Biotechnology

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Last updated on Aug 30, 2024
  1. All
  2. Biotechnology

You've encountered unexpected sequencing results. How can you collaborate with other labs to validate them?

When your lab stumbles upon unexpected sequencing results, it's crucial to validate them with peers. Here's how to foster productive collaborations:

- Reach out to other labs with expertise in similar areas and propose a data exchange or joint analysis.

- Utilize online forums and platforms specific to the scientific community to seek insights and share preliminary findings.

- Attend conferences and workshops to network with fellow researchers and discuss potential collaborative validation studies.

What strategies have you found effective for validating unexpected results?

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Help others by sharing more (125 characters min.)
5 answers
  • Contributor profile photo
    Contributor profile photo
    Pushpanathan Muthuirulan, PhD Msc

    R&D Scientist 🧬🔬 | Human Genetics, Functional Genomics & Drug Discovery Expert | Scientific Advisor & Consultant | 🚀 Advancing Therapeutic Innovation | 🎓UIUC | 💼 Ex-23andMe, GSK, Harvard, NIH

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    - Share findings transparently and invite alternative interpretations. - Involve colleagues or experts with relevant skills for additional insight. - Utilize collaborative platforms to facilitate data exchange. - Hold regular meetings for ongoing feedback and problem-solving. - Align goals to ensure mutual benefit from the collaboration.

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    Joey Bose

    President & CEO of Cytonics | Johns Hopkins School of Medicine | Moving From Insurmountable Challenge To Almost Certain Failure With Unbridled Enthusiasm

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    This prompt feels personal! We encountered a massive sequencing issue while working on CYT-108... we couldn’t access the flanking sequences from the original manufacturer due to the proprietary nature of the plasmid and their lack of cooperation. This posed a potential detrimental issue for our Master Cell Bank (MCB) characterization, which is crucial for our IND filing. To resolve this, we collaborated with other labs to employ whole-genome sequencing (WGS), develop flanking sequence primers, and successfully sequence the 4500bp gene (phew!). The key lesson here is that comprehensive documentation of every step in CMC must be meticulously logged and redundantly stored to avoid such hurdles in the future.

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    Ricardo Chang

    Strategic Business Manager│Business Development │Sales & Commercial │ B2B & B2C │ Disruptive Innovator

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    Para lograrlo, aplica estos enfoques: 🔬 Intercambio de datos con laboratorios especializados: Comparte información clave con equipos de referencia para contrastar metodologías y hallazgos. 🚀 Repetición de pruebas en entornos independientes: Solicita replicación en centros externos para verificar consistencia en los resultados. 📊 Análisis conjunto con expertos en bioinformática: Integra perspectivas multidisciplinarias para interpretar variaciones genéticas con precisión. 🤝 Publicación y discusión en redes científicas: Expone los hallazgos en foros especializados para recibir retroalimentación de la comunidad global.

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    Julien Florkin

    AI Solutions Tailored to your Business ➡️ Save Time. Cut Costs. Grow Profits. 📈 Don’t get left Behind — Let’s Talk Now. 📧

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    🔬 "Alone we can do so little; together we can do so much." – Helen Keller 🧬 When Stanford and MIT researchers encountered unexpected CRISPR gene-editing results, they combined forces to validate findings across different cell lines and techniques. The collaboration led to a deeper understanding of off-target effects and paved the way for optimized protocols. Such multi-lab partnerships ensured reproducibility and increased scientific rigor. 🤝 Effective strategy: Form consortia where multiple labs can systematically validate results in parallel. Shared databases (e.g., GenBank) and platforms like ResearchGate can further enhance data exchange.

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    1
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    Dr. Azizur Rahman

    CEO and President, Centre for Climate Change Research, Toronto, Canada. Youth Policy Board Mentor, World Food Forum (WFF), FAO of the United Nations (UN)

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    To validate unexpected sequencing results, collaborating with other labs can be highly effective. Here are steps you can take to engage in such a collaboration: 1. Consultation and Sharing of Raw Data 2. Cross-Validation Using Different Platforms 3. Replicate Experiments in Another Lab • Conduct Replicates: Have the other lab replicate the sequencing using their equipment, reagents, and protocols to see if the same unexpected results appear. • Blinded Testing: Consider blinded testing, where the collaborating lab processes and analyzes the samples, ensuring unbiased results. 4. Functional or Biological Validation

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